Imagine biting into a soft, tender cookie filled with actual pumpkin pie filling—that’s exactly what these Pumpkin Pie Protein Cookies deliver! These innovative treats combine the beloved flavors of classic pumpkin pie with the convenience and nutrition of a protein-packed cookie. Each cookie features a delicate, slightly sweet dough made with vanilla protein powder, cradling a spoonful of creamy, spiced pumpkin filling that tastes just like the real thing. Topped with a dollop of lightly sweetened whipped cream, they’re like miniature pumpkin pies you can hold in your hand. Perfect for fall gatherings, Thanksgiving dessert tables, or as a post-workout treat that doesn’t sacrifice flavor for nutrition, these cookies offer the best of both worlds. The protein powder adds nutritional value without compromising the soft, bakery-style texture, while the warm pumpkin pie spice fills your kitchen with that irresistible autumn aroma we all crave.

Prep Time: 20 min | Cook Time: 12 min | Total Time: 32 min
Key Ingredients
For the Pumpkin Filling:
- ½ cup canned pumpkin purée (not pumpkin pie filling)
- ¼ cup light brown sugar
- 1 egg, at room temperature
- 1 tablespoon coconut milk
- 1 teaspoon pumpkin pie spice
For the Cookie Dough:
- 1 stick (½ cup) unsalted butter, softened
- ½ cup light brown sugar
- 2 large egg yolks
- 2 cups all-purpose flour
- 1 tablespoon Simple Pumpkin Seed Protein Vanilla (or any vanilla protein powder)
- ½ teaspoon baking powder
- 1 teaspoon pumpkin pie spice
For Topping:
- Lightly sweetened whipped cream
Substitution Notes: Any vanilla protein powder works—whey, plant-based, or collagen protein all work well. Regular milk can replace coconut milk. If you don’t have pumpkin pie spice, make your own with ½ teaspoon cinnamon, ¼ teaspoon ginger, ⅛ teaspoon nutmeg, and a pinch of cloves.
Step-by-Step Instructions
1. Preheat and Prepare Adjust the oven rack to the middle position and preheat to 350°F (175°C). Line a large baking sheet with parchment paper. This prevents sticking and ensures even baking.
2. Make the Pumpkin Filling In a medium bowl, whisk together all the pumpkin filling ingredients: canned pumpkin purée, brown sugar, room temperature egg, coconut milk, and pumpkin pie spice. Whisk until completely smooth with no lumps. The mixture should look like pumpkin pie filling. Set aside while you make the cookie dough.
3. Cream Butter and Sugar In a large bowl, cream the softened butter and light brown sugar together using an electric mixer on medium-high speed. Beat for 2 to 3 minutes until the mixture becomes pale in color and fluffy in texture. This incorporates air for tender cookies.
4. Add Egg Yolks and Vanilla Add the egg yolks and vanilla extract to the butter mixture. Mix on medium speed until well combined and the mixture looks smooth and creamy. Scrape down the sides of the bowl as needed.
5. Combine Dry Ingredients In a separate bowl, whisk together the all-purpose flour, vanilla protein powder, baking powder, and pumpkin pie spice. Make sure the protein powder is evenly distributed with no clumps—this ensures consistent flavor and texture throughout.
6. Mix Wet and Dry Add the dry ingredient mixture to the wet ingredients. Mix on low speed or stir by hand until you have a soft, scoopable dough that isn’t sticky. The dough should hold together well but remain pliable. If it seems too sticky, add a tablespoon more flour; if too dry, add a teaspoon of milk.
7. Shape the Cookie Dough Using a 2-tablespoon cookie scoop, portion out the dough and roll each portion between your palms into a smooth ball. This creates uniform cookies that bake evenly. You should get approximately 18 to 20 cookies.
8. Arrange on Baking Sheet Place the dough balls on the prepared baking sheet, spacing them at least 2 inches apart. They don’t spread dramatically, but they need room for the filling to settle during baking.
9. Create Indentations Using a 1-tablespoon measuring spoon (or the back of a rounded tablespoon), gently press an indent into the center of each dough ball. Press firmly enough to create a well that’s about ½ inch deep, but be careful not to press all the way through to the bottom. The walls of the indent should be thick enough to hold the filling.
10. Fill with Pumpkin Mixture Carefully spoon about 1 tablespoon of the pumpkin pie filling into each indentation. Fill them generously but don’t overfill—the filling should sit just below the rim of the cookie dough. A small offset spatula or spoon works well for this step.
11. Bake Bake for 10 to 12 minutes, or until the cookies are lightly golden at the edges and the pumpkin filling is fully set. The filling should no longer jiggle when you gently shake the pan. Don’t overbake—you want soft, tender cookies, not crispy ones.
12. Cool Completely Let the cookies cool completely on the baking sheet—they’re quite delicate when warm and need time to set. The filling will firm up as it cools. This takes about 20 to 30 minutes. Resist the urge to move them too soon or they may break.
13. Top and Serve Just before serving, pipe or spoon a dollop of lightly sweetened whipped cream onto each cookie. The whipped cream mimics the traditional whipped cream topping on pumpkin pie and adds a lovely finishing touch.
Serving Suggestions
- Fall Dessert Table: Arrange on a platter alongside apple cider donuts and pecan pie bars for an autumn-themed spread
- Thanksgiving Alternative: Serve as individual “pie” portions for guests who want a lighter dessert option
- Coffee Break: Pair with pumpkin spice lattes or chai tea for the ultimate fall treat
- Post-Workout Snack: The protein powder makes these a nutritious option for satisfying sweet cravings after exercise
- Holiday Gift: Package in clear boxes with fall-themed ribbon for thoughtful homemade gifts
Storage & Make-Ahead Tips
Refrigeration: Store cookies in an airtight container in the refrigerator for up to 4 days. The pumpkin filling contains egg and should be kept cold. Add the whipped cream just before serving for the freshest presentation.
Freezing: Freeze baked cookies (without whipped cream) in a single layer on a baking sheet until solid, then transfer to a freezer-safe container. Freeze for up to 2 months. Thaw in the refrigerator overnight, then bring to room temperature and add whipped cream before serving.
Make-Ahead Dough: The cookie dough can be prepared and shaped into balls up to 2 days ahead. Store covered in the refrigerator. Create the indentations and fill with pumpkin mixture just before baking.
Make-Ahead Filling: The pumpkin filling can be made up to 3 days in advance and stored covered in the refrigerator. Give it a good stir before using.
Whipped Cream Tip: Make stabilized whipped cream (with a bit of cream cheese or gelatin) if you need it to hold up longer on the cookies. Regular whipped cream is best added fresh just before serving.
Tips & Tricks
Use Room Temperature Ingredients: Room temperature eggs and softened butter mix more easily and create a smoother dough texture. Take them out of the refrigerator 30 to 60 minutes before baking.
Don’t Skip the Cooling Time: These cookies are very delicate when warm because of the custard-like pumpkin filling. Letting them cool completely on the baking sheet allows both the cookie and filling to set properly, making them easier to handle and transport.
Create Deep Enough Wells: Press firmly when making the indentations—shallow wells won’t hold enough filling and may overflow during baking. Aim for about ½ inch deep with sturdy walls.
Common Mistakes to Avoid
- Overfilling the indentations – Too much filling will overflow during baking; stick to 1 tablespoon per cookie
- Moving cookies while warm – The filling acts like custard and needs to cool and set; warm cookies will break or the filling will spill
- Using pumpkin pie filling instead of purée – Canned pumpkin pie filling contains added sugar and spices; use plain pumpkin purée
- Not spacing cookies far enough apart – They need room to spread slightly without touching each other
- Overbaking – Pull cookies when edges are just golden; the filling should be set but not browned
Chef’s Advice
Flavor Variations:
- Add ½ teaspoon vanilla extract to the cookie dough for extra depth
- Mix ½ cup mini chocolate chips into the dough for chocolate-pumpkin cookies
- Use maple syrup instead of brown sugar in the filling for maple-pumpkin flavor
- Add ¼ teaspoon ground ginger to the cookie dough for extra spice
- Top with candied pecans instead of whipped cream for a crunchy finish
Ingredient Substitutions:
- Any neutral-flavored protein powder works—vanilla whey, pea protein, or collagen
- Almond milk or regular milk can replace coconut milk
- Salted butter can be used if you reduce the salt slightly
- Coconut sugar can replace brown sugar for a different flavor profile
- Greek yogurt (2 tablespoons) can replace the coconut milk for tang
Presentation Ideas:
- Dust with cinnamon or pumpkin pie spice before serving
- Drizzle with caramel sauce for extra indulgence
- Garnish whipped cream with a small piece of candied ginger
- Serve on mini dessert plates with a fork for an elegant presentation
- Arrange in muffin liners for easy grab-and-go treats
Protein Powder Notes: The recipe works best with vanilla-flavored protein powder, but unflavored also works if you add ½ teaspoon more vanilla extract to the dough. Avoid strongly flavored protein powders like chocolate, as they’ll compete with the pumpkin flavor.
History and Cultural Significance
Pumpkin pie is one of America’s most iconic desserts, with roots dating back to early colonial times. Native Americans introduced European settlers to pumpkins, and creative cooks soon discovered that the sweet, dense flesh was perfect for pies. By the 19th century, pumpkin pie had become synonymous with Thanksgiving dinner, cementing its place in American culinary tradition.
The modern trend of incorporating protein powder into baked goods emerged in the 2010s alongside the rise of fitness culture and “functional foods.” Home bakers and recipe developers began experimenting with ways to add nutritional value to traditionally indulgent treats without sacrificing flavor or texture. Protein cookies became particularly popular as pre- and post-workout snacks.
These Pumpkin Pie Protein Cookies represent the convergence of tradition and innovation—taking a beloved classic dessert and reimagining it in a format that fits modern nutritional goals. The thumbprint or filled cookie style has been popular in various cultures for centuries (think Italian crostata cookies or Austrian Linzer cookies), making this recipe both nostalgic and contemporary.
The use of pumpkin seed protein powder is particularly clever, as it creates a full-circle connection: pumpkin in both the filling and the protein source. It’s a testament to how traditional flavors can be adapted to meet current dietary preferences and lifestyle needs.
Final Thoughts
These Pumpkin Pie Protein Cookies are proof that you don’t have to choose between nutrition and indulgence. They deliver all the warm, comforting flavors of classic pumpkin pie—the creamy filling, the warming spices, the sweet whipped cream—in a portable, protein-enhanced format that’s perfect for modern life. Whether you’re meal-prepping healthy treats for the week, bringing something special to a fall gathering, or simply craving pumpkin pie without the commitment of baking a whole pie, these cookies are the answer.
The beauty of this recipe lies in its versatility. They work equally well as a dessert, a snack, or even a protein-packed breakfast treat with your morning coffee. The combination of tender cookie and creamy filling creates a satisfying texture experience that keeps you coming back for more.
So break out that can of pumpkin purée, grab your protein powder, and get ready to create cookies that taste like fall in every bite. These Pumpkin Pie Protein Cookies are about to become your new favorite way to enjoy pumpkin season!
Nutrition Information
| Serving Size | Calories | Protein | Carbs | Fat | Fiber | Sugar |
|---|---|---|---|---|---|---|
| 1 cookie (based on 20 cookies) | 125 | 4g | 16g | 5g | 1g | 8g |
Disclaimer: Nutrition information is estimated using standard online calculation tools and may vary based on ingredients and preparation methods, especially protein powder brands. For accurate dietary advice, consult a qualified nutrition professional.
Course: Cookies, Dessert, Snack | Cuisine: American | Yield: 18-20 cookies



